Nathan Zimmerberg

Talks:

14:00 UTC

MEDYAN.jl: Agent-based modeling of active matter and whole cells

07/28/2023, 2:00 PM β€” 2:30 PM UTC
32-G449 (Kiva)

Agent-based modeling of the whole cell has emerged as a frontier of modern research. To address this challenge, we developed MEDYAN, a mechano-chemical forcefield and simulation software, in C++. Our new Julia package is 10x faster. To achieve this result, the overall architecture was redesigned and various Julia packages were leveraged. I will describe our strategy for combining stochastic reaction diffusion dynamics with movable membrane and filament mechanics. See medyan.org for more details.

Platinum sponsors

JuliaHub

Gold sponsors

ASML

Silver sponsors

Pumas AIQuEra Computing Inc.Relational AIJeffrey Sarnoff

Bronze sponsors

Jolin.ioBeacon Biosignals

Academic partners

NAWA

Local partners

Postmates

Fiscal Sponsor

NumFOCUS